Blackberry Lime Cheesecake Cupcakes Recipe
If you are looking for a dessert that beautifully balances creamy richness with bright, fruity freshness, this Blackberry Lime Cheesecake Cupcakes Recipe is an absolute must-try. Imagine luscious cheesecake swirled with zesty lime, nestled atop a buttery graham cracker crust, and crowned with a vibrant blackberry topping that dances on your tongue with a perfect mix of tart and sweet. These individual-sized delights are as charming to serve at a gathering as they are satisfying to enjoy as a personal treat, making them a versatile favorite you’ll want to make again and again.

Ingredients You’ll Need
Every ingredient in this recipe plays a crucial role, from the buttery crust that adds a satisfying crunch to the tangy lime and juicy blackberries that brighten every bite. Despite the simplicity of the components, each one is essential for achieving that perfect balance of flavor and texture in these cheesecake cupcakes.
- Graham cracker crumbs (1 cup): Provides a crispy, slightly sweet base that’s a classic foundation for cheesecake.
- Sugar (3 tablespoons + 1/2 cup + 2 tablespoons): Sweetens both the crust and the filling as well as the blackberry topping to create layers of flavor.
- Cinnamon (1/4 teaspoon, optional): Adds a gentle warmth and spice to the crust if desired—feel free to leave it out if you prefer plain.
- Unsalted butter (1/4 cup, melted): Binds the crust crumbs and adds richness that toasts up beautifully in the oven.
- Cream cheese (16 oz, softened): The creamy heart of the cheesecake filling, delivering that luscious texture and tang.
- Eggs (2 large): Provide structure to the filling, helping it set perfectly without cracking.
- Vanilla extract (1 teaspoon): Enhances the overall flavor, giving the filling a subtle sweetness and warmth.
- Sour cream (1/4 cup): Adds a slight tanginess and extra creaminess to the cheesecake filling.
- Fresh lime juice (1 tablespoon + 1 tablespoon): Brightens the filling and the blackberry topping with its zesty acidity.
- Lime zest (zest of 1 lime): Concentrates lime flavor for an aromatic pop in the filling.
- Fresh blackberries (1 cup): The star fruit topping that adds a juicy, slightly tart finish.
How to Make Blackberry Lime Cheesecake Cupcakes Recipe
Step 1: Prepare the crust
Preheat your oven to 325°F (163°C) and line a 12-cup muffin tin with cupcake liners for easy release later. Combine the graham cracker crumbs, sugar, optional cinnamon, and melted butter in a medium bowl, stirring until the mixture resembles wet sand. This will be the deliciously crisp and buttery foundation your cupcakes need.
Step 2: Press the crust
Divide the graham cracker mixture evenly among your cupcake liners, firmly pressing it down with the back of a spoon or your fingers. This step ensures your crust holds together nicely after baking. Pop the tin into the oven for 5-7 minutes until the crust sets and turns lightly golden. Then, take it out and let it cool while you whip up the filling.
Step 3: Prepare the cheesecake filling
In a large mixing bowl, beat the softened cream cheese with an electric mixer until smooth and creamy—that’s your base of indulgence. Slowly add the granulated sugar, blending well before adding eggs one at a time, ensuring each is fully incorporated. Finally, stir in the vanilla extract, sour cream, fresh lime juice, and zest. These ingredients marry to create a luscious filling with a bright citrus note.
Step 4: Fill the cupcake liners
Generously spoon the cheesecake batter over your cooled crusts, filling each liner about three-quarters full. This leaves just the right amount of space for the cheesecake to rise without overflowing, creating that ideal cupcake shape everyone loves.
Step 5: Bake the cupcakes
Bake for 18-20 minutes, watching until the centers are just set and only jiggle slightly when gently shaken. This indicates a perfectly creamy texture inside. After turning off the oven, crack the door open and let the cupcakes cool there for an hour. This gentle cooling helps prevent cracks. Finally, chill them in the fridge for at least two hours or preferably overnight to fully set the cheesecake layer.
Step 6: Make the blackberry topping
While the cupcakes rest, prepare the vibrant topping. Combine the blackberries, sugar, and lime juice in a small saucepan over medium heat. Cook for about five minutes, mashing the berries as they soften and the mixture thickens into a glossy, juicy compote. Let it cool to room temperature to allow the flavors to meld beautifully.
Step 7: Top the cupcakes
Once chilled, spoon a dollop of the blackberry compote onto each cheesecake cupcake. The burst of blackberry and lime flavor complements the creamy base perfectly, creating an irresistible balance. Add your finishing touches, such as more lime zest or fresh blackberries, for extra visual appeal and flavor.
Step 8: Serve
Serve these beauties immediately to enjoy their fresh brightness, or keep them chilled in the fridge until you’re ready. They make a stunning treat for any occasion—from casual brunches to elegant dinner parties.
How to Serve Blackberry Lime Cheesecake Cupcakes Recipe

Garnishes
Adding garnishes not only elevates your cupcakes visually but also bursts with flavor and texture. Fresh blackberries scattered on top highlight the fruitiness, while a bit of lime zest adds an aromatic zing. If you’re feeling fancy, a sprig of fresh mint can embrace both taste and color, making your presentation impossible to resist.
Side Dishes
These cupcakes shine as a dessert star but pair beautifully with light, complementary treats. Serve alongside a crisp green salad for a fresh contrast, or a simple bowl of mixed berries to keep the fruity theme alive. For drinks, a sparkling lemonade or a delicate white wine never fails to enhance the lime and blackberry notes.
Creative Ways to Present
Want to up your presentation game? Try displaying the cupcakes on a tiered stand for a party or arrange them on a rustic wooden platter for a cozy vibe. You can also pipe whipped cream rosettes beneath the blackberry topping for a fluffy cloud effect or place each cupcake in vibrant colored liners to match your event’s theme. The platter is your canvas!
Make Ahead and Storage
Storing Leftovers
These cheesecake cupcakes keep wonderfully in the fridge for up to 3 days. Store them in an airtight container to preserve their freshness and prevent the crust from becoming soggy. They taste just as divine the next day, making them perfect for prepping ahead of time.
Freezing
If you want to make these in advance or save some for later, these cupcakes freeze beautifully. Place them in a single layer in an airtight container or wrapped tightly in plastic wrap and aluminum foil. When frozen this way, they can last up to 2 months without losing flavor or texture.
Reheating
Cheesecake cupcakes are best enjoyed chilled, but if you’d like to soften them slightly, let them sit at room temperature for 15-20 minutes before serving. Avoid microwaving as it can alter the texture, making the cheesecake grainy or the crust soggy.
FAQs
Can I use frozen blackberries for this recipe?
Absolutely, frozen blackberries work well especially if fresh ones are out of season. Just be sure to thaw them completely and drain excess liquid before cooking the topping to prevent it from becoming too watery.
How do I prevent my cheesecake cupcakes from cracking?
Cooling the cupcakes gradually is key. Allowing them to cool in the oven with the door slightly open helps avoid sudden temperature changes that cause cracks. Also, avoid overbaking—the centers should still jiggle slightly when done.
Can I make these gluten-free?
Yes! Simply swap the graham cracker crumbs for a gluten-free graham cracker or cookie crumbs, and ensure all other ingredients are gluten-free. This substitution works great and keeps the crust deliciously crisp.
Is it necessary to use sour cream in the filling?
Sour cream adds a lovely tang and extra creaminess but if you don’t have it on hand, you can substitute with Greek yogurt or leave it out entirely. Just know the texture and flavor will be slightly less rich.
Can these cupcakes be made vegan?
While this recipe relies on cream cheese and eggs, you can experiment with vegan cream cheese and egg substitutes like flax eggs. Keep in mind the texture and taste may vary, but with some tweaking, you can enjoy a vegan version of this delightful recipe.
Final Thoughts
I hope you are as excited as I am to dive into this Blackberry Lime Cheesecake Cupcakes Recipe. These cupcakes bring together the best of creamy, tart, and sweet in every bite, all packaged in a fun, personal-sized treat. Whether you’re sharing with friends or indulging solo, you’ll find these cupcakes not only delicious but downright addictive. Give them a try—you might just find your new favorite dessert!
Print
Blackberry Lime Cheesecake Cupcakes Recipe
- Total Time: 4 hours 15 minutes
- Yield: 12 servings 1x
Description
These Blackberry Lime Cheesecake Cupcakes are a delightful twist on classic cheesecake, featuring a smooth cream cheese filling infused with fresh lime juice and zest, nestled in a crunchy graham cracker crust, and topped with a tangy homemade blackberry compote. Perfect for summer gatherings or any special occasion, these cupcakes combine creamy, fruity, and zesty flavors in every bite.
Ingredients
Crust
- 1 cup graham cracker crumbs
- 3 tablespoons sugar
- 1/4 teaspoon cinnamon (optional)
- 1/4 cup unsalted butter, melted
Cheesecake Filling
- 16 oz (2 cups) cream cheese, softened
- 1/2 cup granulated sugar
- 2 large eggs
- 1 teaspoon vanilla extract
- 1/4 cup sour cream
- 1 tablespoon fresh lime juice
- Zest of 1 lime
Blackberry Topping
- 1 cup fresh blackberries (or frozen, thawed)
- 2 tablespoons granulated sugar
- 1 tablespoon fresh lime juice
Instructions
- Prepare the crust: Preheat your oven to 325°F (163°C). Line a 12-cup muffin tin with cupcake liners. In a medium bowl, combine the graham cracker crumbs, sugar, cinnamon if using, and melted butter. Stir until the mixture resembles wet sand.
- Press the crust: Divide the crust mixture evenly among the cupcake liners, pressing firmly with the back of a spoon. Bake for 5-7 minutes until set and lightly golden. Remove and cool.
- Prepare the cheesecake filling: In a large mixing bowl, beat softened cream cheese until smooth. Add sugar and mix until combined. Add eggs one at a time, mixing after each. Stir in vanilla extract, sour cream, lime juice, and lime zest until smooth.
- Fill the cupcake liners: Spoon the cheesecake batter over the cooled crusts, filling each about 3/4 full.
- Bake the cupcakes: Bake for 18-20 minutes until centers are set but slightly jiggly. Turn off oven, crack the door, and let cupcakes cool inside for 1 hour. Refrigerate for at least 2 hours or overnight to chill completely.
- Make the blackberry topping: In a small saucepan, combine blackberries, sugar, and lime juice. Cook over medium heat, mashing berries as they cook for 5 minutes until thickened. Cool to room temperature.
- Top the cupcakes: Spoon cooled blackberry topping onto each cheesecake cupcake.
- Serve: Garnish with extra lime zest or fresh blackberries if desired. Serve immediately or keep refrigerated until serving.
Notes
- Use room temperature cream cheese to ensure a smooth filling without lumps.
- You can substitute frozen blackberries if fresh are not available; just thaw before using.
- For easier removal, let the cupcakes chill thoroughly before removing liners.
- If desired, add a pinch of cinnamon to the crust for a warm spice note.
- These cupcakes are best served chilled and can be stored in the refrigerator for up to 3 days.
- Prep Time: 15 minutes
- Cook Time: 27 minutes
- Category: Dessert
- Method: Baking
- Cuisine: American